Portfolio

Our software

BioNetGen

Bionetgen Implementation of the Heat Shock Response Bogdan Iancu has implemented the Bionetgen source code of the Heat Shock Response. It can be downloaded as a zip-file from here .

Gene Assembly Simulator

Download GeneAssemblySimulator.jar_.zip GeneAssemblySimulator.jar_.tar.gz Tutorial Creating a new drawing area To be able to draw a new graph you have to create a new drawing area. By clicking on the icon �in the toolbar or choosing �New Graph� in file menu, a new internal window will popup where it is possible to draw a graph. Open …

Heat Shock Response – Petri Net

Petri Net Implementation of the Heat Shock Response Diana-Elena Gratie has built Petri net models of the heat shock response. They can be downloaded as a zip-file from here . The latest standard and colored Petri net models are available here.

Heat Shock Response – PRISM

PRISM Implementation of the Heat Shock Response Sepinoud Azimi has implemented the PRISM source code of the Heat Shock Response. It can be downloaded as a zip-file from here .

Heat Shock Response Simulator

Kristian Nylund has developed Heat Shock Simulator. It can be downloaded from here .

WEBRSIM – Reaction System Simulator

This page provides a Web interface to the brsim reaction system simulator. For more information about how to describe reaction systems and their contexts, see the project page. Example 1: A Binary Counter In Example 3 of paper [1], the authors show how binary counters can be built with reaction systems. In short, the idea …